Theme builder 3.3.5-M3-conf210 upgrade issue

I've recently upgraded from
Confluence 2.10 Theme builder 3.3.4-Conf210
to
Confluence 3.0.0_01 Theme builder 3.3.5-M3-conf210

Now the Problem I'm having is my theme only works on my Dashboard and only one space. (i dont see any difference between the spaces)

all the other pages have:

Access Keys:Skip to content (Access Key - 0)

at the top and all the formatting is messed up.

Any advise ?

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